Last updated: 2019-12-05

Checks: 2 0

Knit directory: reproducible_bioinformatics/

This reproducible R Markdown analysis was created with workflowr (version 1.5.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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    Ignored:    .Rhistory

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    Modified:   analysis/_site.yml

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File Version Author Date Message
Rmd 0b04728 davetang 2019-12-05 wflow_publish(files = "analysis/*.Rmd")
html 5dc4fe0 davetang 2019-12-05 Build site.
Rmd 179c2bb davetang 2019-12-05 wflow_publish(files = c(“analysis/conda.Rmd”, “analysis/docker.Rmd”, “analysis/index.Rmd”,
html 9aa9aa4 davetang 2019-12-05 Build site.
Rmd ec7204f davetang 2019-12-05 wflow_publish(files = c(“analysis/about.Rmd”, “analysis/conda.Rmd”, “analysis/docker.Rmd”,
html 2f6c2fd Dave Tang 2019-12-05 Build site.
Rmd f19271d Dave Tang 2019-12-05 wflow_publish(files = c(“analysis/docker.Rmd”, “analysis/index.Rmd”))
html 7b114c5 First Last 2019-12-04 Build site.
Rmd a4180a4 First Last 2019-12-04 wflow_publish(files = c(“analysis/conda.Rmd”, “analysis/index.Rmd”))
html 60a5900 First Last 2019-12-04 Build site.
html d83e8cb davetang 2019-12-03 Build site.
Rmd 88b592b davetang 2019-12-03 New workflowr project
Rmd 4e0dfff davetang 2019-12-03 Start workflowr project.

My aim for this workshop is to introduce computational tools and demonstrate how they can be used to help promote reproducibility when performing bioinformatic analyses. Many of these tools help adhere to these Ten Simple Rules for Reproducible Computational Research:

I will be talking about Docker, Conda, and workflowr. I share some of my thoughts on reproducible bioinformatics in this post on my blog.